The bike was in for new fork seals and brakes at the dealer yesterday (wow, stopping is almost as fun as going now!). I had them look for why I am having intermittent running issues, pretty much the usual stuff, high idle, surging, sputtering etc.. They didn't find anything diagnostically (I had reset the adaptions in TuneECU, but not ridden anywhere before it went in), they reset adaptions (again) and it passed all the "tests" on their factory analysis system.
Road test seemed ok. They said see how it adapts over his tank of fuel (they added something to clean the valves). If the issues persist it will be off with the tank and check coils and leads, plugs and maybe a valve service.
I will take a look at the coils and leads, plugs this weekend myself, but apparently since I added the Rivco risers the tank cannot lift back anymore and the bars/risers will have to be removed..
Would an ignition issue cause the adaptions to "drift off" and compound over time? It seems that resetting adaptions is only a temporary solution.