Paul, I feel for you man. This type of thing really tests ones patience. All great guesses and ideas from the group. I'm not sure I understand the noise you identified in the first place. Obviously it was out of the ordinary enough to shut it down immediately. That eliminates timing chain chatter in my mind, or even new valve lash noises.
So when you rotate the crankshaft by hand now with the plugs out, do you hear or feel anything new from when you did it just after adjusting all the shims with the feeler gauge?
Is it possible that some small bit found its way into one of the intakes since you had the throttle bodies off? EESH!
You need to stop hanging around Murphy