I found a local independent shop who can do the whole job for a surprisingly reasonable labor cost, and best of all, with warranty. They've done lots of transmission jobs, and although not for Rockets, they were familiar with the bike and even had their own R3 service manual on the shelf. I'll probably drop off the bike this Saturday.
While the guts of the beast are open, are there any worthwhile durability upgrades to the Roadster motor or transmission, such as undercutting the dogs on some gears? Or just blueprint everything to factory specs?