As I recall, the TORS tune uses the secondary butterflies to make the mix richer. It doesn't actually add much if any fuel. If you get the TORS tune loaded and also remove secondary butterflies you are most likely making the bike run even leaner. Also, because you have to remove the stock air box plenum to get at the butterflies you should consider taking the opportunity to put on either triple filters or something like the (improved) Ramair. If you're not sure why, have a go at reinstalling that piece of plastic from hell.
You will need to add fuel even if you only do some of the above. Power Commander, Dobeck or TuneECU (or TuneBoy) are your best options there.
By the way,
@warp9.9 , it sounds like yours is an older GIPro (not displaying with clutch in) and may not include the ATRE feature.