Do you mean this? The dark spots like putting?
That's iron or some metal probably iron ( steel) that was on an abrasive pad that got burnished into the stainless. I have enough welding skills and knowledge to understand this issue and triumph is not known for their high quality control.
The only way to get this fixes is to take it off the heat shield and the manifold, use some solvent to remove the contaminants. Stainless is not reactive to many acids so pick your poison. Then buff the stainless clean.
Or just live with it and any time someone says anything about it just ask them to look closer then drive there head into the hot exhaust and exclaim " do you see it now"