No. That was just for the work on the trans. They back cut the dogs for better holding engagement, they cut the ring clip groves deeper, replace damaged forks, and a billet 4th gear and inspect and repair any other damage. Splitting the engine seems easy enough. All your doing is taking the bottom end apart.
Let me rephrase that... It's a lot of work but they said there shop rate was not cheap, my guess is $120-$150/h and it's probably 4 hours to split the case and assemble for a pro shop. Plus $250 for shipping a pallet fright. Plus your time. My guess would be $2500 -$3000 all on if you sent them a pallet with your engine.