Not to alarm you, and my experience is limited, but I know I'd be a bit concerned (as you are since you posted) with pinging/rattling. Most folks comment on whistling or wooshing as their first reaction to RAMAir installation. I have never heard it myself, typically wearing earplugs when riding, or over-the-ears shooters' muffs when in the garage, so maybe i've just missed that sound.
Are you sure it's not something in the exhaust, or side panel, or some such ?