I am an idiot.. A no start story

Yep, it will. You're only turning the Fob on or off with that switch on the fob, just saves the battery. (in the fob) I've always turned mine off when I finish riding for the day & take it inside, just what I've always done & no issues so far. I did buy a spare new fob battery to keep on the bike in case it goes flat on me while I'm out. Yeah I know I can start using the fender method but having a new battery is also easy.
 
My father always told me "When ever everything else has failed, read the instructions".