If any one would have been able to get into the ECU, it would have been them.
Absolutely how i understood it too...i have done the 12 min tune myself on a few bikes when i changed cans..filters etc . One Rocket when i went and had it tuned on the dyno ...after doing the 12 min tune was reading 15 % lean which is really lean to the point where valves are going to get burnt if left that way...so i would say from that, its ok probably to even the idle out but get it tuned correctly if you dont want the motor to be harmed with constant running...just my 2 bobs worth.